Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARVKRAVNAHKKRRSILKASRGYRGQRSRLYRKAKEQQLHSLNYAYRDRRARKGEFRKLWIARINAAARLNDITYNRLIQGLKAAGVEVDRKNLADIAISDPAAFTALVDVARAALPEDVNAPSGEAA
4WFB Chain:N ((2-117))
-PRVKGGTVTRARRKKTIKLAKGYFGSKHTLYKVAKQQVMKSGQYAFRDRRQRKRDFRKLWITRINAAARQHEMSYSRLMNGLKKAGIDINRKMLSEIAISDEKAFAQLVTKAKDAL------------
General information:
TITO was launched using:
RESULT:
Template:
4WFB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24930 for 681 contacts (-36.6/contact) +
2D Compatibility (PS) -12787 + (NN) -6730 + (LL) 404
1D Compatibility (HY) -8800 + (ID) 2900
Total energy: -55743.0 ( -81.85 by residue)
QMean score : 0.689
(partial model without unconserved sides chains):
PDB file :
Tito_4WFB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WFB-query.scw
PDB file :
Tito_Scwrl_4WFB.pdb
: