Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDFDTERVSRAVAAALVGPGGVALVVKVFAGLPGVIHTPARRGFFRSNPERIQIGDWRYEVAHDGRLLAAHMVNGIVIAEDALIAEAVGPHLARALGQIVSRYGATVIPNINAAIEVLGTGTDYRF
4NEE Chain:G ((175-211))
--------------------------------------------LYRTSPDLVPMGDWTSRVVH--LLNDQHL--GVVTAATSLI------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4NEE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11073 for 164 contacts (-67.5/contact) +
2D Compatibility (PS) -3810 + (NN) -416 + (LL) 5528
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -14071.0 ( -85.80 by residue)
QMean score : -0.051
(partial model without unconserved sides chains):
PDB file :
Tito_4NEE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NEE-query.scw
PDB file :
Tito_Scwrl_4NEE.pdb
: