Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLSGGQKGPHPIQGIGAGFVPPVLDQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQVARRPENAGKLIVVVLPDFGERYLSTPLFADVAD
4I1Y Chain:A ((5-301))
MTIAENIAQLIGGTPLVRLRRVTDGAAADVVAKLESFNPAGSIKDRIGVAMIDAAEKAGLIKPDTIILEPTSGNTGIALAMVSAARGYKCVLTMPDTMSIERRMLLRAYGAELVLTPGAEGMAGAIAKAEELAKTDDRYFIPQ------NPAVHAVTTAEEVWRDTDGKVDIFVSGVGTGGTITGVAQVIKQRRPSAQFVAVEP----------------------------DLALVDEVITVGNDDALELARRMATEEGLLFGISSGAAVWAARELAHRPENAGKLIVVVLPDFGE-------------
General information:
TITO was launched using:
RESULT:
Template:
4I1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160934 for 2273 contacts (-70.8/contact) +
2D Compatibility (PS) -29861 + (NN) -20384 + (LL) 1628
1D Compatibility (HY) -32000 + (ID) 11000
Total energy: -252551.0 ( -111.11 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_4I1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4I1Y-query.scw
PDB file :
Tito_Scwrl_4I1Y.pdb
: