Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKSF---YDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLVNSPF
1UX8 Chain:A ((6-123))
-----NAPYEAIG-EELLSQLVDTFYERVASHPLLKPIFP-SDLTETARKQKQFLTQYLGGPPLYTEEHGHPMLRARHLPFPITNERADAWLSCMKDA---MDHVGLEGEIREFLFGRLELTARHMVN---
General information:
TITO was launched using:
RESULT:
Template:
1UX8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60210 for 798 contacts (-75.5/contact) +
2D Compatibility (PS) -12684 + (NN) -8362 + (LL) 440
1D Compatibility (HY) -10800 + (ID) 2400
Total energy: -94016.0 ( -117.81 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_1UX8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UX8-query.scw
PDB file :
Tito_Scwrl_1UX8.pdb
: