Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDSGQLGAADTPLRLLSSVHYLTDGELPQLYDYPDDGTWLRANFISSLDGGATVDGTSGAMAGPGDRFVFNLLRELADVIVVGVGTVRIEGYSGVRMGVVQRQHRQARGQSEVPQLAIVTRSGRLDRDMAVFT---RTEMAPLVLTTTAVADDTR--QRLAGLAEV-----IACSGDDPGTVDEAVLVSQLAARGLRRILTEGGPTLLGTFVERDVLDELCLTIAPYVVGGLARRIV--TGPGQVLTRMRCAHVLTDDSGYLYTRYVKT
2P4G Chain:A ((37-258))
-----------------------------------------RAIAITSINGSATLSGVSGPMGDQTDADLLIQLRGWADAIVVGAETARKENYGPVVLPHGIKNQRQKLGRCGLPKLTLLSKSLYFDFSSELFSPDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPTSTNP----LKIAFDALHARRLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNIICPVESPLFGKISDDSFTTRLVLEMLSSSPNGLIFSRY---
General information:
TITO was launched using:
RESULT:
Template:
2P4G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113154 for 1557 contacts (-72.7/contact) +
2D Compatibility (PS) -23074 + (NN) -8267 + (LL) 1688
1D Compatibility (HY) -14400 + (ID) 3300
Total energy: -160507.0 ( -103.09 by residue)
QMean score : 0.336
(partial model without unconserved sides chains):
PDB file :
Tito_2P4G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P4G-query.scw
PDB file :
Tito_Scwrl_2P4G.pdb
: