Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHCPFCRHPDSRVIDSRETDEGQAIRRRRSCPECGRRFTTVETAVLAVVKRSGVTEPFSREKVISGVRRACQGRQVDDDALNLLAQQVEDSVRAAGSPEIPSHDVGLAILGPLRELDEVAYLRFASVYRSFSSADDFAREIEALRAHRNLSAHS
5FKU Chain:A ((1076-1135))
----------------------------------------------------------AREKYARGLAISLTDRQIDDQLLNRLRQSLEPHR----SGTIPVHLY-------YQRADARARLRFGATWR-------------------------
General information:
TITO was launched using:
RESULT:
Template:
5FKU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1349 for 291 contacts (-4.6/contact) +
2D Compatibility (PS) -6248 + (NN) -1847 + (LL) 5828
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: -7166.0 ( -24.63 by residue)
QMean score : 0.008
(partial model without unconserved sides chains):
PDB file :
Tito_5FKU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5FKU-query.scw
PDB file :
Tito_Scwrl_5FKU.pdb
: