Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAELTETSPETPETTEAIRAVEAFLNALQNEDFDTVDAALGDDLVYENVGFSRIRGGRRTATLLRRMQGRVGFE-VKIHRIGADGAAVLTERTDALIIGPL--RVQFWVCGVFEVDDGRITLWRDYFDVYDMFKGLLRGLVALVVPSLKATL
4R9K Chain:A ((21-136))
-------------STPDEKIVLEFMDALTSNDAAKLIKYFAEDTMYQNMPLPPAYGRDAVEQTLAGLFKVMSIDAVEVFHIGSSKGLVFTERVDVLRALPTGKSYNLSILGVFQLTDGKITGWRDYFDL-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4R9K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63220 for 817 contacts (-77.4/contact) +
2D Compatibility (PS) -12305 + (NN) -5268 + (LL) 2836
1D Compatibility (HY) -8800 + (ID) 1700
Total energy: -88457.0 ( -108.27 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_4R9K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R9K-query.scw
PDB file :
Tito_Scwrl_4R9K.pdb
: