Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARK--GLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLTVGLEPLLDLH
5EER Chain:A ((2-247))
IKVGVLGAKGRVGQTIVAAVNESDDLELVAEIGVDDDLSLLVDNGAEVVVDFTTPNAVMGNLEFCINNGISAVVGTTGFDDARLEQVRDWLEGKDNVGVLIAPNFAISAVLTMVFSKQAARFFESAEVIELHHPNKLDAPSGTAIHTAQGIAAARKEAGMDAQPDATEQALEGSRGASVDGIPVHAVRMSGMVAHEQVIFGTQGQTLTIKQDSYDRNSFAPGVLVGVRNIAQHPGLVVGLEHYLGL-
General information:
TITO was launched using:
RESULT:
Template:
5EER.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160420 for 1909 contacts (-84.0/contact) +
2D Compatibility (PS) -26609 + (NN) -14422 + (LL) 44
1D Compatibility (HY) -28000 + (ID) 8050
Total energy: -237457.0 ( -124.39 by residue)
QMean score : 0.761
(partial model without unconserved sides chains):
PDB file :
Tito_5EER.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5EER-query.scw
PDB file :
Tito_Scwrl_5EER.pdb
: