Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRRRLAIVQRWRGQDEIPTDWGRCVLTIGVFDGVHRGHAELIAHAVKAGRARGVPAVLMTFDPHPMEVVYPGSHPAQLTTLTRRAELVQDLGIEVFLVMPFTTDFMKLTPDRFIHELLVEHLHVVEVVVGENFTFGKKAAGNVDTLRRAGERFGFAVESMSLVSEHHSNETVTFSSTYIRSCVDAGDMVAAMEALGRPHRVEGVVVRGEGRGA-ELGFPTANVAPPMYSAIPADGVYAAWFTVL-GHGPVTGTVVPGERYQAAVSVGTNPTFSGRTRTVEAFVLDTTADLYGQHVALDFVGRIRGQKKFESVRQLVAAMGADTERARDLLSTG |
| 5A88 Chain:A ((3-137)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHFYVTGPVVRGAGRGGKELGFPTANQYFHDTVALPADGVYAGWLTILPTEAPVSGNMEPEVAYAAAISVGTN------QRSVESFVLDRDADLYGHDVKVEFVDHVRAMEKFDSVEQLLEVMAKDVQKTRTLLA-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5A88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -77466 for 901 contacts (-86.0/contact) +
2D Compatibility (PS) -13829 + (NN) -5735 + (LL) 14712
1D Compatibility (HY) -12000 + (ID) 3400
Total energy: -97718.0 ( -108.46 by residue)
QMean score : 0.555
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