Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVKNTIAATSFAAAGLAALAVAVSPPAAAGDLVGPGCAEYAAANPTGPASVQGMSQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLN-SGQYTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVAGQTSPANVVG---TRQTLQGASVTVTGQGNSLKVGNADVVCGGVSTANATVYMIDSVLMPPA
2LTB Chain:A ((527-634))
--------------------------------------------------------------------------------------LTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYH-IGDEILVSGGIGALVRLKSLQGDKLEVSLKNNVVSVNKEPVAEPDIMATNGVVHVITNVLQP--
General information:
TITO was launched using:
RESULT:
Template:
2LTB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61104 for 707 contacts (-86.4/contact) +
2D Compatibility (PS) -11060 + (NN) -565 + (LL) 5036
1D Compatibility (HY) -7200 + (ID) 1850
Total energy: -76743.0 ( -108.55 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_2LTB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LTB-query.scw
PDB file :
Tito_Scwrl_2LTB.pdb
: