Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGS-----VFVACRLRPLTLDDVDFTLAVLGGNDLRGL-----NLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG
4YC5 Chain:A ((46-234))
--ELTNASLTGADLSYANLHHANLSRANLRSADLRNANLSHANLSGANLEEANLEAANLRGADLHEANLSGADLQEANLTQANLKDANLSDANLEQADLAGADLQGAVLDGANLHGANLNNANLSEAMLTRANLEQADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLA--
General information:
TITO was launched using:
RESULT:
Template:
4YC5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168634 for 1560 contacts (-108.1/contact) +
2D Compatibility (PS) -18154 + (NN) 2671 + (LL) -16
1D Compatibility (HY) -6800 + (ID) 4200
Total energy: -195133.0 ( -125.09 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_4YC5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YC5-query.scw
PDB file :
Tito_Scwrl_4YC5.pdb
: