Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKSPPRFLNSPLSDFFIKWMSRINTWMYRRNDGEGLGGTFQKIPVALLTTTGRKTGQPRVNPLYFLRDGGRVIVAASKGGAEKNPMWYLNLKANPKVQVQIKKEVLDLTARDATDEERAEYWPQLVTMYPSYQDYQSWTDRTIPIVVCEP
3R5Z Chain:A ((25-144))
-------------------------------NSGGTEGTTLQGKPVVVLTTKGAKTGKLRKTPLMRVEHNGEYAVVASLGGAPKHPVWYHNIKAEPHVELRDGTEVGDYTAREVTGEEKRVWWERAVEVWPDYAEYQTKTTREIPVFVLTP
General information:
TITO was launched using:
RESULT:
Template:
3R5Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64889 for 847 contacts (-76.6/contact) +
2D Compatibility (PS) -13583 + (NN) -8500 + (LL) 1856
1D Compatibility (HY) -7600 + (ID) 2700
Total energy: -95416.0 ( -112.65 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_3R5Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R5Z-query.scw
PDB file :
Tito_Scwrl_3R5Z.pdb
: