Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLAEAADAINFGLAGRVVLVTGGVRGVGAGISSVFAEQGATVITCARRA--VD---------GQPYEFHRCDIRDEDSVKRLVGEIGERHGRLDMLVNNAGGSPY-ALAAEATHNFHRKIVELNVLAPLLVSQHANVLMQAQPNGGSIVNICSVSGRRPTPGTAAYGAAKAGLENLTTTLAVEWAPK-VRVNAVVVGMVETERSELFYGDAESIARVAATVPLGRLARPADIGWAAAFLASDAASYISGATLEVHGGGEPPPYLGASSANK
3O4R Chain:A ((13-258))
-------------LANKVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKR-GGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLCSEDASYITGETV-VVGGGTP-----------
General information:
TITO was launched using:
RESULT:
Template:
3O4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135271 for 2005 contacts (-67.5/contact) +
2D Compatibility (PS) -25660 + (NN) -14762 + (LL) 1120
1D Compatibility (HY) -15200 + (ID) 4150
Total energy: -193923.0 ( -96.72 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_3O4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O4R-query.scw
PDB file :
Tito_Scwrl_3O4R.pdb
: