Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPALVVGPAAWHAVHVTQSSSAITPGQTAELYPGDIKSVLLTAEQIQARIAELGEQIGNDYRELSATTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGSSTSSSGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
1YFZ Chain:A ((31-204))
-----------------------------------DIEEILITEEQLKAKVKELGEMITRDYE------GKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDKPERREADVKVDYCGFKIPDKFVVGYGLDYAEKYRNLPFIGVLKPELY-
General information:
TITO was launched using:
RESULT:
Template:
1YFZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163143 for 1354 contacts (-120.5/contact) +
2D Compatibility (PS) -19381 + (NN) -10628 + (LL) 2744
1D Compatibility (HY) -26000 + (ID) 5050
Total energy: -221458.0 ( -163.56 by residue)
QMean score : 0.686
(partial model without unconserved sides chains):
PDB file :
Tito_1YFZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YFZ-query.scw
PDB file :
Tito_Scwrl_1YFZ.pdb
: