Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPGRWSAETRLALVRRARRMNRALAQAFPHVYCELDFTTPLELAVATILSAQSTDKRVNLTTPALFARYRTARDYAQADRTELESLIRPTGFYRNKAASLIGLGQALVERFGGEVPATMDKLVTLPGVGRKTANVILGNAFGIPGITVDTHFGRLVRRWRWTTAEDPVK------VEQAVGELIERKEWTLLSHRVIFHGRRVCHARRPACGVCVLAKDCPSFGLGPTEPLLAAPLVQGPETDHLLALAGL
4YOQ Chain:A ((39-236))
---------------------------------------PYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVLKAWEGLGYY-SRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVT-DDIAKCSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEEL--------------------
General information:
TITO was launched using:
RESULT:
Template:
4YOQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102065 for 1406 contacts (-72.6/contact) +
2D Compatibility (PS) -19293 + (NN) -11567 + (LL) 5216
1D Compatibility (HY) -12800 + (ID) 2650
Total energy: -143159.0 ( -101.82 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_4YOQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YOQ-query.scw
PDB file :
Tito_Scwrl_4YOQ.pdb
: