Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVGVLVAAATPIISSASATPANIAGMVVFIDPGHNGANDASIGRQVPTGRGGTKNCQASGTSTNSGYPEHTFTWETGLRLRAALNA-LGVRTALSRGNDNALGPCVDERANMANALRPNAIVSLH--ADGGPASGRGFHVNYSAPPLN-AIQAGPSVQFARIMRDQLQASGIPKANYIGQDGLYGRSDLAGLNLAQYPSILVELGNMKNPADSALMESAEGRQKYANALVRGVAGFLATQGQAR
4RN7 Chain:A ((6-186))
----------------------------VFIDPGH-GGNDK-----------GTE-------SKTSNRYEKDLNLQIAKKLANKLSKQKDIQVVVSRTDDTYIS--LKDRAILANNSSADVLVSIHLNAEKNGNTATGIETWYRNKATDGSKELAQTVQSTIVSYVKVRDRGIVENNF------------EVLRESNMPAILIECGFLTTPSEEQKIINEKYQDQLAEGIVQGVLSYLDSKG---
General information:
TITO was launched using:
RESULT:
Template:
4RN7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39202 for 1478 contacts (-26.5/contact) +
2D Compatibility (PS) -19533 + (NN) -10863 + (LL) 3048
1D Compatibility (HY) -10000 + (ID) 2400
Total energy: -78950.0 ( -53.42 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_4RN7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RN7-query.scw
PDB file :
Tito_Scwrl_4RN7.pdb
: