Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTARLRPELAG-LPVYVPGKTVPGAIKLASNETVFGPLPSVRAAIDRATDTV-------NRYPDNGCVQLKAALARHL----GPDFAPEHVAVGCGSVSLCQQLVQVTASVGDEVVFGWRSFELYPPQVRVAGAIPIQVPLTDHTFDLYAMLATVTDRTR---LIFVCNPNNPTSTVVGPDALARFVEAVPAHILIAIDEAYVEYIRDGMRPDSLGLVRAH-NNVVVLRTFSKAYGLAGLRIGYAIGHPDVITALDKVYVPFTVSSIGQAAAIASLDAADELLARTDTVVAERARVSAELRAAGFTLPPSQANFVWLPLGSRTQDFVEQAADARIVVRPYGTDG-VRVTVAAPEENDAFLRFARRWRSDQ |
| 4RAE Chain:A ((15-368)) | ----LRADLRGKAPYGAPQLAVP--VRLNTNEN---PHPPTRALVDDVVRSVREAAIDLHRYPDRDAVALRADLAGYLTAQTGIQLGVENIWAANGSNEILQQLLQAFGGPGRSAIGFVPSYSMHPIISDGTHTEWIEASRAND-FGLDVDVAVAAVVDRKPDVVFIASPNNPSGQSVSLPDLCKLLDVAPG--IAIVDEAYGEF---SSQPSAVSLVEEYPSKLVVTRTMSKAFAFAGGRLGYLIATPAVIDAMLLVRLPYHLSSVTQAAARAALRHSDDTLSSVAALIAERERVTTSLNDMGFRVIPSDANFVLFGEFADAPAAWRRYLEAGILIRDVGIPGYLRATTGLAEENDAFLRASARIATD- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4RAE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -204752 for 2771 contacts (-73.9/contact) +
2D Compatibility (PS) -37502 + (NN) -26587 + (LL) 1276
1D Compatibility (HY) -16800 + (ID) 5950
Total energy: -290315.0 ( -104.77 by residue)
QMean score : 0.553
|
|
|