Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAYDVARVRGLHPSLGDGWVHFDAPAGMLIPDSVATTVSTAFRRS-GASTVGAHPSARRSAAVLDAAREAVADLVNA-DPGGVVLGADRAVLLSLLAEA-SSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQW-ESLISKSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPPIGAMVFRDPSVMNSFG----------SVSTNPYAT--GPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRV-FDYLMVSLRSLPLVMLIGRPEAQIPVVSFAVHKVPADRVVQRLADNGIL--AIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASLG |
| 4LW4 Chain:A ((7-395)) | --FNPAQFRAQFPALQDAGVYLDSAATALKPEAVVEATQQFYSLSAG------FAEAQRLTARYEAAREKVAQLLNAPDDKTIVWTRGTTESINMVAQCYARPRLQPGDEIIVSVAEHHANLVPWLMVAQQTGAKV--VKLPLNAQRLPDVDLLPELITPRSRILALGQMSNVTGGCPDLARAITFAHSAGMVVMVDGAQGAVHFPADVQQLDIDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWLGGGKMVHEVSFDGFTTQSAPWKLEAGTPNVAGVIGLSAALEWLADYDINQAESWSRSLATLAE--DALAKRPGFRSFRCQDSSL---------------LAFDFAGVHHSDMVTLLAEYGIALRAGQHCAQPLLAELGVT---GTLRASFAPYNTKSDVDALVNAV---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LW4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -242005 for 3169 contacts (-76.4/contact) +
2D Compatibility (PS) -40357 + (NN) -20248 + (LL) 2312
1D Compatibility (HY) -20400 + (ID) 5500
Total energy: -326198.0 ( -102.93 by residue)
QMean score : 0.529
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