Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR
3SDG Chain:A ((46-234))
-------------------------ELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAE-----DRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGE--
General information:
TITO was launched using:
RESULT:
Template:
3SDG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104612 for 1334 contacts (-78.4/contact) +
2D Compatibility (PS) -20096 + (NN) -15541 + (LL) 768
1D Compatibility (HY) -24800 + (ID) 9150
Total energy: -173431.0 ( -130.01 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_3SDG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SDG-query.scw
PDB file :
Tito_Scwrl_3SDG.pdb
: