Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATYSMLSQVTFPLAEAGYYVVPVALADETFRQNGLTSAGDVHQVSPAKLREIYGADAALYVTVSDYGTRYM---VISSATIVTASAKLVDLRSGTTLWTGSATASSEEGNGGNNGGLVGMLITAAVKQIINSSVEDAGYPIAGMTSARLLSAGQPGGLLYGPRSPRYGSD
4MHH Chain:H ((61-140))
----------------------------NQKFKVRATLTVGRSSSTAYMDLRSLTSEDSAVYYCVRNYGSSYGYFDVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNV
General information:
TITO was launched using:
RESULT:
Template:
4MHH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4965 for 293 contacts (-16.9/contact) +
2D Compatibility (PS) -8041 + (NN) -241 + (LL) 2724
1D Compatibility (HY) -1200 + (ID) 1050
Total energy: -12773.0 ( -43.59 by residue)
QMean score : -0.156
(partial model without unconserved sides chains):
PDB file :
Tito_4MHH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MHH-query.scw
PDB file :
Tito_Scwrl_4MHH.pdb
: