Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLRPSHVHVFPPSRDLPAATSPHRETLLRSGCAWNGSLYLGYPLGQPQLTVQRLSLAAHERLDWQVHPMPSALYVLKGELRLETRDGAQSTRVLEGEAAGCLMNIIHR-LIAGAEPVEALLFHAGVEGMPVGLGERGEMPDA
3FJS Chain:A ((32-108))
----------------------------------------------EHRLEVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIG-VD-GAQRRLHQGDLLYLGAGAAHDVNAITNTSLLVTVVLV------------------
General information:
TITO was launched using:
RESULT:
Template:
3FJS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34809 for 491 contacts (-70.9/contact) +
2D Compatibility (PS) -7753 + (NN) 3778 + (LL) 1820
1D Compatibility (HY) -1200 + (ID) 700
Total energy: -38864.0 ( -79.15 by residue)
QMean score : 0.117
(partial model without unconserved sides chains):
PDB file :
Tito_3FJS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FJS-query.scw
PDB file :
Tito_Scwrl_3FJS.pdb
: