Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPLTRLVPLALLLLAGCAGPLPQPDPQMAWVELRSAPANTLLAERLDGERLSDGRYFQVTPGRHVLEVRFQYELYGGSGGGGGGFGEPVQINCYQQVVYDGFEAGRRYRLEVR------PQLRRALA--------LLSDERGEVVARSNFQTSRCPPY
1JIW Chain:I ((15-80))
----------------------------------------------------------------------------------WTLQQDEAPAICHLELRDSEVAEASGYDLGGDTACLTRWLPSEPRAWRPTPAGIALLERGGLTLMLLGRQGEGDYRV
General information:
TITO was launched using:
RESULT:
Template:
1JIW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6291 for 284 contacts (-22.2/contact) +
2D Compatibility (PS) -5450 + (NN) -1670 + (LL) 4544
1D Compatibility (HY) 1600 + (ID) 300
Total energy: -7567.0 ( -26.64 by residue)
QMean score : -0.069
(partial model without unconserved sides chains):
PDB file :
Tito_1JIW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JIW-query.scw
PDB file :
Tito_Scwrl_1JIW.pdb
: