Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKLIVALFGLLLAACSSSPPETPPTRVVIWLHAAPNLNPSAAGQAAPLRLRLYELKKDTAFGRADYFALTDNAQSTLGGDLVEQDEFLLRP------GEERRIERTLDEQTRQLGFVAAYRDLDRATWRQV-LDVPGQRTSHLDITLGAQAIGIVARPAP
2O8D Chain:A ((444-526))
---------------------------------------------------------------RSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMNDL-EKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFS
General information:
TITO was launched using:
RESULT:
Template:
2O8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11369 for 345 contacts (-33.0/contact) +
2D Compatibility (PS) -8033 + (NN) -1653 + (LL) 4356
1D Compatibility (HY) -4000 + (ID) 1300
Total energy: -21999.0 ( -63.77 by residue)
QMean score : 0.241
(partial model without unconserved sides chains):
PDB file :
Tito_2O8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2O8D-query.scw
PDB file :
Tito_Scwrl_2O8D.pdb
: