Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAELTLQERLQPSLLDRLTDDEPGNLKEAAERRVLTLNQLKASVLRDLAWLFNTTSLFDH---GPAARMPAGNSVLNYGLPALAGHTASSVD-VHAIEALLTETIATFEPRIIRSSLRVRAQLLPGEMDHNALSFEIEGDLWAEPAPLRLLLTTNLDLETGHVRVAQGERRRT
4EDR Chain:A ((197-280))
----------------------------------------------------NITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKAINDVAPFFNVSPEQL
General information:
TITO was launched using:
RESULT:
Template:
4EDR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9677 for 485 contacts (-20.0/contact) +
2D Compatibility (PS) -8087 + (NN) 2979 + (LL) 4580
1D Compatibility (HY) -4800 + (ID) 1150
Total energy: -16155.0 ( -33.31 by residue)
QMean score : 0.067
(partial model without unconserved sides chains):
PDB file :
Tito_4EDR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EDR-query.scw
PDB file :
Tito_Scwrl_4EDR.pdb
: