Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVDGFVQPVGEGLADQLVGHQVGYGGVQWDQCLAEVGDVAVVHFFHQAVRQVGFVEQGVEAVVAGEQRRRGEEEL------LGDLQHRLDPFLDAGFAGHAVGGVEQVRYLFDVGVDEAGEYVFRVLALRLDGAMQVGQAAGYQISQVTVAGFAEVRLLDEFTEGSGVHGVSHTTGMVKKRRNIAGGARRLRRDCHNRFVVMRG |
2AKF Chain:A ((3-24)) | ---------------------------------------------------------------------RLEEDVRNLNAIVQKLQERLDRLEETVQAK--------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2AKF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -1099 for 44 contacts (-25.0/contact) +
2D Compatibility (PS) -1799 + (NN) -2064 + (LL) 12336
1D Compatibility (HY) -1600 + (ID) 400
Total energy: 5374.0 ( 122.14 by residue)
QMean score : 0.530
|
|
|