Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKVAIVLLLLATLVSLFSGLFFLVKDQGHGSRVVNSLTVRVVLAAATLVLVAWGFYSGELNSHAPWHF
2WDQ Chain:D ((58-86))
--KVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV---------
General information:
TITO was launched using:
RESULT:
Template:
2WDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9263 for 107 contacts (-86.6/contact) +
2D Compatibility (PS) -3238 + (NN) -4983 + (LL) 1152
1D Compatibility (HY) -3200 + (ID) 350
Total energy: -19882.0 ( -185.81 by residue)
QMean score : 0.254
(partial model without unconserved sides chains):
PDB file :
Tito_2WDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WDQ-query.scw
PDB file :
Tito_Scwrl_2WDQ.pdb
: