Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQIEFFFDFGSPTTYLAWTQLPRIAAAHGASIAWRPMLLGGVFKATGNHSPIEVPAKGRYTLHDLARYAKRYGVPLAFNPAF-----PINTLTLMR--GAQGYLGGEGFQPYLKAVFEALWVRQQNLGKPEVVAQVLAEAGFDPDE---FLRLVGDEQVKEGLKATTEEAVRRGVFGAPSFFVG----DQLFFGQDRLDFVAEVLAG
3RPN Chain:A ((4-210))
LPRTVELFYDVLSPYSWLGFEILCRYQNIWNINLQLRPSLITGIMKDSGNKPPGLLPRKGLYMANDLKLLRHHLQIPIHFPKDFLSVMLEKGSLSAMRFLTAVNLEHPEMLEKASRELWMRVWSRNEDITEPQSILAAAEKAGMSAEQAQGLLEKIATPKVKNQLKETTEAACRYGAFGLPITVAHVDGQTHMLFGSDRMELLAHLLGE
General information:
TITO was launched using:
RESULT:
Template:
3RPN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121998 for 1506 contacts (-81.0/contact) +
2D Compatibility (PS) -20480 + (NN) -5385 + (LL) 0
1D Compatibility (HY) -14800 + (ID) 2750
Total energy: -165413.0 ( -109.84 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_3RPN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RPN-query.scw
PDB file :
Tito_Scwrl_3RPN.pdb
: