Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYAEWIAVKVVVSKSIGTVGIRNATLQWGKFYRYTNKDDEISTEEVSSMNVQAGSPQWIASCGRENASSGTQGSFDCYDGNTKMGTFSWDDPWKSGATNTWSFTPASADYAGITSGGNATGTDIGEVTLTLGRFS
2WND Chain:A ((16-49))
-------------------------------FHKYTRRDDKIDKPSLLTM-MKENFPNFLSACDKKGTNYLAGVFEKKDKNEDKKIDFSEFLSLMGDIATDYHKKSHGAAPCS-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2WND.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2459 for 152 contacts (-16.2/contact) +
2D Compatibility (PS) -3560 + (NN) -756 + (LL) 2816
1D Compatibility (HY) -3200 + (ID) 450
Total energy: -7609.0 ( -50.06 by residue)
QMean score : 0.279
(partial model without unconserved sides chains):
PDB file :
Tito_2WND.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WND-query.scw
PDB file :
Tito_Scwrl_2WND.pdb
: