Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTLPPCPQCNSEYTYEDGAL-LVC--PECAHEWSPNEAATASDDGKVIKDSVGNVLQDGDTITVIKDLKVKGSSLVVKVGTKVKNIRLVDGDHDIDCKIDGIGAMKLKSEFVRKV
4ZYN Chain:A ((374-408))
--TTKPCPRCNVPIEKNGGCMHMKCPQPQCKLEWCWNCGCEWNRACMGDHWFDV--------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4ZYN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11185 for 148 contacts (-75.6/contact) +
2D Compatibility (PS) -3676 + (NN) -5700 + (LL) 3400
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -19811.0 ( -133.86 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_4ZYN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZYN-query.scw
PDB file :
Tito_Scwrl_4ZYN.pdb
: