Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLINTQVQPFKVNAFHNGKFIEVTEESLKGKWSVLIFMPAAFTFNCPTEIEDAANNYGEFQKAGAEVYIVTTDTHFSHKVWHETSPAVGKAQFPLIGDPTHQLTNAFGVHIPEEGLALRGTFVINPEGVIKTVEIHSNEIARDVGETVRKLKAAQYTAAHPGEVCPAKWKEGEKTLAPSLDLVGKI
1N8J Chain:A ((1-186))
-SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAAHPGEVCPAKWKEGEATLAPSLDLVGKI
General information:
TITO was launched using:
RESULT:
Template:
1N8J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108949 for 1416 contacts (-76.9/contact) +
2D Compatibility (PS) -20219 + (NN) -4893 + (LL) 208
1D Compatibility (HY) -16400 + (ID) 5500
Total energy: -155753.0 ( -110.00 by residue)
QMean score : 0.672
(partial model without unconserved sides chains):
PDB file :
Tito_1N8J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N8J-query.scw
PDB file :
Tito_Scwrl_1N8J.pdb
: