Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAFSTQDSDEVLSEINVTPLVDVMLVLLVVFIVTAPLLTNSIPINLPKTESVAPPEQKDPLVVSIDGAGKLFVNKDEIQPELLESNLAAAKAKDAEVRVQLQADEGVNYGQVAKAMASIERAGITRLAVITAR |
2LIP Chain:A ((220-272)) | -----------------------------VFGVTGATDTSTIPL-------VDPANALDPSTLALFGTGTVMVNRGSGQNDGVVSKCSALYGQVLSTSYKWNHLDEINQLLGVRGANAEDPVAVIRTHANRLK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LIP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 4284 for 299 contacts (14.3/contact) +
2D Compatibility (PS) -5050 + (NN) 1185 + (LL) 2976
1D Compatibility (HY) -2400 + (ID) 800
Total energy: 195.0 ( 0.65 by residue)
QMean score : 0.122
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