Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQASSTDTPFV-IAGRTYGSRLLVGTGKYKDLDETRRAIEASGAEIVTVAVRRTNIGQNPDEPNLLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGRLAYLAGRMPRKLYASASSPLDGLID
4N6F Chain:A ((11-250))
-------DEPWLKIGAREFRSRILVGIEQYDSVPLVRDVLNAAGADVFITTVDPDNRRSSLLLMDLADELPLDDFTWIGTTSFARTKESALRSARILRDSL-GIEILKLDVRGDDNT--PDNAGTVEAARELRAEGMELLPFILPDLATARALEEAGCAALRVMASPVASGRGIANPAAIRELIEQIGIPVVVEGGIGSARHVAEAMELGASATLVNTALVRAESPLLMAAAMRQAALAGLLSYESGPMPEV--------------
General information:
TITO was launched using:
RESULT:
Template:
4N6F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -176683 for 2020 contacts (-87.5/contact) +
2D Compatibility (PS) -26240 + (NN) -8265 + (LL) 1272
1D Compatibility (HY) -11600 + (ID) 4350
Total energy: -225866.0 ( -111.81 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_4N6F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N6F-query.scw
PDB file :
Tito_Scwrl_4N6F.pdb
: