Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTTVIPPSLLDVDFPAGSVALVGAGPGDPGLLTLRAWALLQQAEVVVYDRLVARELIALLPESCQRIYVGKRCGHHSLPQEEINELLVRLARQQRRVVRLKGGDPFIFGRGAEELERLLEAGVDCQVVPGVTAASGCSTYAGIPLTHRDLAQSCTFVTGHLQNDGRLD-LDWAGLARGKQTLVFYMGLGNLAEIAARLVEHGLASDTPAALVSQGTQAGQQVTRGALAELPALARRYQLKPPTLIVVGQVVALFAERAMAHPSYLGAGSPVSREAVACA
1S4D Chain:A ((15-253))
-----------------GSVWLVGAGPGDPGLLTLHAANALRQADVIVHDALVNEDCLKLARPGAVLEFAGKRG--PSPKQRDISLRLVELARAGNRVLRLKGGDPFVFGRGGEEALTLVEHQVPFRIVPGITAGIGGLAYAGIPVTHREVNHAVTFLTGHD-------RINWQGIASGSPVIVMYMAMKHIGAITANLIAGGRSPDEPVAFVCNAATPQQAVLETTLARAEADVAAAGLEPPAIVVVGEVVRLRAALDWIGALDGRKLAADP-------
General information:
TITO was launched using:
RESULT:
Template:
1S4D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -193293 for 1932 contacts (-100.0/contact) +
2D Compatibility (PS) -25086 + (NN) -12958 + (LL) 1316
1D Compatibility (HY) -18800 + (ID) 5300
Total energy: -254121.0 ( -131.53 by residue)
QMean score : 0.620
(partial model without unconserved sides chains):
PDB file :
Tito_1S4D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S4D-query.scw
PDB file :
Tito_Scwrl_1S4D.pdb
: