Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLPAMRTGLLCALLGVTAPAWAEYVTVISFGGANKEAQETAFYKPFKSATGNRVVHGSYNGDLAKLKRMVEISHVSWDVVEVEAPELARGCEEGLFEKLDMAKVGDPADFVPGAVQPCGVGIFVWTTL----LAYNPGKVAG-SPQGWADFWDVKKFPGKRGLRWGAKYSLEFALMADGVAPKDVYQTLATPAGV-------ERAFRKLDELKP-YIHWWKSGQDPVRDLADGTVVMSSAYN---GRIAAAQAEKQRLAMVWSGGVY-DFDFWALPVGVWKKQLAEEFIRFASQPEQQKAFAENIAYGPANRKAVGLLDPQVAANLPTAPQNMQNAVGMNVAFWAEHGEALEQRFQNWAKR |
| 4EDP Chain:A ((36-348)) | ------------------------KLVVSTWGLNEDVLKETVFEPFAKEHGVEIVLDIGNNS-ERLTKMKNNPNSQIDITYLAESFAEQGVEAGIFDKLDYSKIPNASEMNEKAKSTVEAGYGPAYTLNSIGIVVDPS--AGIEINSWEDLW-------KPELK--NKIAIPDITTTNGPA---MVEIAAEKAGVDVKTDNGEAAFKELEALKPNVVKTYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPE--VINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKEVQEKTAKALNESPVNKEV--KLSEEETKNLTYGPV-VDNAKVIDFKFV---NSVMDQWVNNWNRI |
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General information:
TITO was launched using:
| RESULT:
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Template: 4EDP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -133724 for 2372 contacts (-56.4/contact) +
2D Compatibility (PS) -31680 + (NN) -11702 + (LL) 2940
1D Compatibility (HY) -12400 + (ID) 3950
Total energy: -190516.0 ( -80.32 by residue)
QMean score : 0.341
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