Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKIFLACPYSHADAEVVEQRFRACNEVAATIVRAG--H--VVFSQVSMSHP---INLCLAELDRAAIGRLWAPVDAFYMDHLEELIVLDLPGWRDSAGIRREMEFFEAGGQRVSLWSEVEHEFR
1F8Y Chain:A ((3-117))
KKTIYFGAGWFTDRQ------NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGV-YIPDEEDVGLGMELGYALSQGKYVLLVIPDEDYGK
General information:
TITO was launched using:
RESULT:
Template:
1F8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69930 for 724 contacts (-96.6/contact) +
2D Compatibility (PS) -11472 + (NN) 49 + (LL) 736
1D Compatibility (HY) -400 + (ID) 550
Total energy: -81567.0 ( -112.66 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_1F8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F8Y-query.scw
PDB file :
Tito_Scwrl_1F8Y.pdb
: