Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQVAKRAMTDTPDDRTGEASGLSKRQAFHRQHRQRAEEEARRLLDARAEQGGRWLDWVAGQLYLLRPPEYAAMVRRELQRLSGD
2ROD Chain:B ((20-29))
-------------------------------------------------------------------PPEFAAQLRK--------
General information:
TITO was launched using:
RESULT:
Template:
2ROD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 454 for 32 contacts (14.2/contact) +
2D Compatibility (PS) -1205 + (NN) -1128 + (LL) 5660
1D Compatibility (HY) -400 + (ID) 300
Total energy: 3081.0 ( 96.28 by residue)
QMean score : 0.160
(partial model without unconserved sides chains):
PDB file :
Tito_2ROD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ROD-query.scw
PDB file :
Tito_Scwrl_2ROD.pdb
: