Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRAINDPGNEDPGSLLETDADALLGGAAAQAPEERCRLAAQACIRACERYLALCTESSREQRQHAG-------------DCADLCRLAALLLERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRPLLPA
3LMF Chain:A ((12-110))
-----------------------------------------QACIDACNHCYRTCLRMAMNHCLEAGGKHVEADHLRLMMNCAEICQTSLNFMLSGSRFSPKVCGVCAEICDACAKSCEQLDGME-ECVQTCRQCAEHCRKMAAL
General information:
TITO was launched using:
RESULT:
Template:
3LMF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22521 for 558 contacts (-40.4/contact) +
2D Compatibility (PS) -8496 + (NN) -1883 + (LL) 2084
1D Compatibility (HY) 1200 + (ID) 550
Total energy: -30166.0 ( -54.06 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_3LMF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LMF-query.scw
PDB file :
Tito_Scwrl_3LMF.pdb
: