Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFVVLEECIRCKHTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPVAAIRAEDEVPLGQRQFIALNGELAAHPNWTQITRKK-PAPDDHDAWFGLPGKLAELDRNGA
5FD1 Chain:A ((1-106))
-AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECPAQAIFSEDEVPEDMQEFIQLNAELAEV--WPNITEKKDPLPDAED-WDGVKGKLQHLER---
General information:
TITO was launched using:
RESULT:
Template:
5FD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84215 for 807 contacts (-104.4/contact) +
2D Compatibility (PS) -11450 + (NN) -10312 + (LL) 24
1D Compatibility (HY) -12800 + (ID) 3700
Total energy: -122453.0 ( -151.74 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_5FD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5FD1-query.scw
PDB file :
Tito_Scwrl_5FD1.pdb
: