Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDKKTQTRARILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEAFEQLLGKRRELLGELDPGLSGKERRALAAAFYLSRKHRDAQ---VDAGCPLPATLAEVARLPEGFREVLSRHVEIMVTSLAESPEETDVALADLVLMIGGLALARALGPGELSDRVLRAAKQAVN
3QBM Chain:A ((4-112))
---KGQETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFA---VGLAGHKHTVDTIIAFLDVFRSYAERPPLVGGCPILNTAIE--------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3QBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27363 for 686 contacts (-39.9/contact) +
2D Compatibility (PS) -11374 + (NN) -7829 + (LL) 6136
1D Compatibility (HY) -4000 + (ID) 1700
Total energy: -46130.0 ( -67.24 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_3QBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QBM-query.scw
PDB file :
Tito_Scwrl_3QBM.pdb
: