Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNH---GARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
3T1U Chain:A ((2-161))
----------------------------IKLQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQGGGFEPGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVIIEKAE--
General information:
TITO was launched using:
RESULT:
Template:
3T1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77307 for 1264 contacts (-61.2/contact) +
2D Compatibility (PS) -16670 + (NN) -3773 + (LL) 3012
1D Compatibility (HY) -12000 + (ID) 4400
Total energy: -111138.0 ( -87.93 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_3T1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T1U-query.scw
PDB file :
Tito_Scwrl_3T1U.pdb
: