Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNLYTERVLSVHHWNDTLFSFKTTRNPGLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREPFRNQGRQTDLMRSGKLFEDIGLPPMNPQDDRAMICGSPSMLEETSAVLDSFGLKISPRMGEPGDYLIERAFVEK
4FK8 Chain:A ((18-271))
--KFDTATVLSVHHWTDTLFSFTCTRDQALRFNNGEFTMVGLEVDGKPLTRAYSIVSPNYEEHLEFFSIKVQNGPLTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERFDKVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKLVYYPTV-------EGRITDLIASGKLFTDLDMPPFSPEQDRVMLCGSTAMLKDTTELLKKAGL-VEGKNSAPGHYVIERAFVD-
General information:
TITO was launched using:
RESULT:
Template:
4FK8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142908 for 2071 contacts (-69.0/contact) +
2D Compatibility (PS) -26561 + (NN) -10197 + (LL) 576
1D Compatibility (HY) -30000 + (ID) 7650
Total energy: -216740.0 ( -104.65 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_4FK8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FK8-query.scw
PDB file :
Tito_Scwrl_4FK8.pdb
: