Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIPHDL---------------LEADTLNNLLEDFVT----REGTDNGDETPLDVRVERARHALRRGEAVILFDPESQQCQLMLRSEVPAELLRD
3PAX Chain:A ((86-161))
-LIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVAYSLLRGGNEDGDKDPIDINYEKLRTDIK------VVDKDSEEAKII------------
General information:
TITO was launched using:
RESULT:
Template:
3PAX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2349 for 205 contacts (-11.5/contact) +
2D Compatibility (PS) -5918 + (NN) -3181 + (LL) 1808
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -15440.0 ( -75.32 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_3PAX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PAX-query.scw
PDB file :
Tito_Scwrl_3PAX.pdb
: