Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNILVRPSQTPKGQCWQVCLDQQAVNFRSESEARRFVDRLEARLRAPHVLPELKQRTA
1XOD Chain:A ((89-114))
--------------------KKFGLTFQSPADARAFDRGIRRAIED------------
General information:
TITO was launched using:
RESULT:
Template:
1XOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1274 for 97 contacts (-13.1/contact) +
2D Compatibility (PS) -2938 + (NN) -983 + (LL) 2324
1D Compatibility (HY) -1600 + (ID) 250
Total energy: -4721.0 ( -48.67 by residue)
QMean score : 0.676
(partial model without unconserved sides chains):
PDB file :
Tito_1XOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XOD-query.scw
PDB file :
Tito_Scwrl_1XOD.pdb
: