Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDRLQIEDLLLGDGKEVVKGALITTQYKGTLEDGTLFDSSYERGRPFQCVIGTGRVIKGWDQGLMGMKVGGKRRLFVPSHLAYGERQVGAHIKPHSNLLFEIELLEVLTRDD
3UF8 Chain:A ((106-209))
----LKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATLVFEVELLDV-----
General information:
TITO was launched using:
RESULT:
Template:
3UF8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56815 for 777 contacts (-73.1/contact) +
2D Compatibility (PS) -10439 + (NN) 6053 + (LL) 328
1D Compatibility (HY) -7600 + (ID) 2650
Total energy: -71123.0 ( -91.54 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_3UF8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UF8-query.scw
PDB file :
Tito_Scwrl_3UF8.pdb
: