Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLNTPRNKPSRTETEAVAASSGRSAVGRRDYTEQLRRAARRNAWDLYGEHFY
3NKZ Chain:A ((19-38))
------------------------------TLSEQMLVLATEGNWDALVD---
General information:
TITO was launched using:
RESULT:
Template:
3NKZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1376 for 86 contacts (-16.0/contact) +
2D Compatibility (PS) -2294 + (NN) -832 + (LL) 1616
1D Compatibility (HY) -1200 + (ID) 250
Total energy: -4336.0 ( -50.42 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_3NKZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NKZ-query.scw
PDB file :
Tito_Scwrl_3NKZ.pdb
: