Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSAKNLKITFNPGTPIETRALRGLSLDIPAGQFVTVIGSNGAGKSTFLNAVSGDLPIDSGQILIDDEDVT-RKPVWARANRVARVFQDPMAGTCEDLTIEENMALAQRRGAGRGLGRAVQASMRDGFRESLATLGLGLENRLGDRIGLLSGGQRQAVSLLMAALQPSRILLLDEHTAALDPRTADFVLHLTARIVAEKKLTTMMVTHSMRQALDVGERTVMLHQGQVVLDVSGEQRKGLDVPDLLAMFEKVRGEKLADDALLLG
1MT0 Chain:A ((2-234))
-ITFRNIRFRYKPDSPV---ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLR-RQVGVVLQD---NVLLNRSIIDNISLAN---PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTVKN-ADRIIVMEKGKIV--EQGKHKELLSEPESLYSY----------------
General information:
TITO was launched using:
RESULT:
Template:
1MT0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136849 for 1852 contacts (-73.9/contact) +
2D Compatibility (PS) -25131 + (NN) -9671 + (LL) 2512
1D Compatibility (HY) -16800 + (ID) 3150
Total energy: -189089.0 ( -102.10 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_1MT0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MT0-query.scw
PDB file :
Tito_Scwrl_1MT0.pdb
: