Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNRVRELRAERGWSQAELAGKLEVSRQTVNAIETGRYDPSLPLAFKLARVFGLAIEAIFDDREGQLD
2LYJ Chain:A ((4-61))
--NNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIF--------
General information:
TITO was launched using:
RESULT:
Template:
2LYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27838 for 420 contacts (-66.3/contact) +
2D Compatibility (PS) -6296 + (NN) -1674 + (LL) 408
1D Compatibility (HY) -6800 + (ID) 1400
Total energy: -43600.0 ( -103.81 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_2LYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LYJ-query.scw
PDB file :
Tito_Scwrl_2LYJ.pdb
: