Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVFQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLD-------ADGVHAPRHPRIRREELDITDSQRLQRLFEALPRL----DVLVNNAGISRDRE--EYDLATFERVLRLNLSAAMLASQLA-RPLLAQRGGSILNIASMYSTFGSADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGGYLCA
2PNF Chain:A ((7-248))
---------GKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGNVGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVLSEEIK--QKYKEQIPLGRFGSPEEVANVVLFLCSELASYITGEVIHVNGGMF--
General information:
TITO was launched using:
RESULT:
Template:
2PNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127790 for 1905 contacts (-67.1/contact) +
2D Compatibility (PS) -24998 + (NN) -13783 + (LL) 1456
1D Compatibility (HY) -20400 + (ID) 4200
Total energy: -189715.0 ( -99.59 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_2PNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PNF-query.scw
PDB file :
Tito_Scwrl_2PNF.pdb
: