Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELNLTTDEARVSYGIGRQLGDQLRENPVPGMTLDAVLAGLSDAFAGIDSRVSGEALSASFQVIRERMQAEAQAKAEAAAGEGRAYLAENAKREGVTVLPSGLQFEVLSTGEGAK-PSREDTVRTHYHGTLIDGTVFDSSYQRGQPAEFPVGGVIAGWVEALQLMNAGSKWRLHVPSELAYGGQAVGS-IPPHSVLVFDVELLEIL
1JVW Chain:A ((48-170))
-----------------------------------------------------------------------------------GRLFMEQKAAQPDAVKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNEVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISI-
General information:
TITO was launched using:
RESULT:
Template:
1JVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68839 for 898 contacts (-76.7/contact) +
2D Compatibility (PS) -13632 + (NN) -6918 + (LL) 6012
1D Compatibility (HY) -8000 + (ID) 3000
Total energy: -94377.0 ( -105.10 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_1JVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JVW-query.scw
PDB file :
Tito_Scwrl_1JVW.pdb
: