Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTASEEKFTRQTLLDVQPLTPNLFTLRTSRDAGFRFRAGQFARLGVYKPSGSIVWRAYSMVSAPHDEFLDFFSIVVPDGEFTSELSRLREGDQLLVDRQAFGFLTLDRFVDGRDLWLLATGTGVAPFVSILQDFEVWERFESIKLVYSVRESKELAYRELIA-GLAEREYLAEHA-HKLQFIPVVTREQVPGCLNGRITTLIENGDLERAADL-ELTPEHSRVMLCGNPQMIEDTRAVLKARGMNLSLTRRPGQVAVENYW
4FK8 Chain:A ((18-266))
------KFDTATVLSVHHWTDTLFSFTCTRDQALRFNNGEFTMVGL-EVDGKPLTRAYSIVSPNYEEHLEFFSIKVQNGPLTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYERFDKVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKLVYYPTV---------EGRITDLIASGKLFTDLDMPPFSPEQDRVMLCGSTAMLKDTTELLKKAGLVEGKNSAPGHYVIE---
General information:
TITO was launched using:
RESULT:
Template:
4FK8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163138 for 1984 contacts (-82.2/contact) +
2D Compatibility (PS) -25751 + (NN) -8010 + (LL) 1332
1D Compatibility (HY) -24400 + (ID) 4900
Total energy: -224867.0 ( -113.34 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_4FK8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FK8-query.scw
PDB file :
Tito_Scwrl_4FK8.pdb
: